Let me start by saying that I absolutely loved my 2.0 EOS. Most trouble free car I ever leased. This car is all about the top. Other issues can be fixed but if the top has problems, you're screwed. Make sure it opens and closes without binding and that it seals well. Water test it if you can. Most common leak is the A pillar and that's most likely a clogged drain.
BTW - negotiate in wheel refinishing or get them to take $$ off the price because it's going to cost you around $4-500 to get those wheels repaired.